Stacked violin plot of gene expression across groups

Usage

stacked_violin_plot_sc(
  object,
  features,
  grouping_variable,
  feature_labels = NULL,
  scale = FALSE,
  clip = NULL,
  modality = c("rna", "adt"),
  palette = BX_PALETTES
)

Arguments

object: A single cell class.
features: Character vector. Gene IDs to plot, one row each.
grouping_variable: String. Obs column to group by.
feature_labels: Optional named character vector mapping gene ids to display labels (default: NULL).
scale: Boolean. Whether to z-score the expression values.
clip: Optional numeric. Clip z-scores if scale = TRUE.
modality: String. One of c("rna", "adt").
palette: String. Discrete palette for the group fills. One of c("main", "sequential", "diverging", "viridis", "spectral"), see bx_colors().

Value

A ggplot object.