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Per-metric violin plots from a CellQc object

violin_plot_sc.CellQc.Rd

Per-metric violin plots from a CellQc object

Usage

# S3 method for class 'CellQc'
violin_plot_sc(
  x,
  log_scale = FALSE,
  show_outlier = TRUE,
  raster = NULL,
  palette = BX_PALETTES,
  ...
)

Arguments

x

A CellQc object.

log_scale

Logical. Apply a log10 y-axis (default: FALSE).

show_outlier

Logical. Overlay outlier points (default: TRUE).

raster

Optional boolean. Shall the plot be rasterised. If NULL and number of cells is larger than 1e5, defaults to TRUE.

palette

String. Discrete palette for the group colours. One of c("main", "sequential", "diverging", "viridis", "spectral"), see bx_colors(). Ignored when show_outlier = TRUE.

...

Ignored.

Value

A named list of ggplot objects, one per metric.