Run diffusion scoring on a precomputed kernel — rs_diffuse • genewalkR

Run diffusion scoring on a precomputed kernel

Usage

rs_diffuse(
  kernel,
  scores,
  n_bkgd,
  n_inputs,
  bkgd_indices,
  method,
  n_perm,
  seed
)

Arguments

kernel: External pointer to DiffusionKernel
scores: Numeric. The scores.
n_bkgd: Integer. Number of background nodes.
n_inputs: Integer. Number of input columns
bkgd_indices: Integer. 0-based node indices for the background
method: String. One of c("raw", "z", "mc").
n_perm: Integer. Number of permutations (MC only)
seed: Integer RNG seed (MC only)

Value

Scores per given node