Iterate through different epsilon parameters — cor_module_check

This functions iterates through a set of provided epsilons and checks for each one to what extend the underlying affinity matrix will follow a power law distribution.

Usage

cor_module_check_epsilon(
  object,
  rbf_func = c("bump", "gaussian", "inverse_quadratic"),
  epsilons = c(0.25, seq(from = 0.5, to = 10, by = 0.5)),
  .verbose = TRUE
)

Arguments

object: The class, see BulkCoExp(). You need to run cor_module_processing() before running this function.
rbf_func: The type of RBF function you want to apply. A choice of c('bump', 'gaussian', 'inverse_quadratic').
epsilons: Vector of floats. The different epsilon parameters you would like to run.
.verbose: Boolean. Controls verbosity of the function.

Value

The class with added data to the properties for subsequent usage.