Split CoReMo modules by correlation sign — cor_module_coremo_cor

This function will split the identified modules by their correlation sign. In certain cases, positive and negatively correlated genes can be part of the same module. This function will annotate them with "_pos" and "_neg" respectively.

Usage

cor_module_coremo_cor_sign(object, min_stability = NULL, .verbose = TRUE)

Arguments

object: The class, see BulkCoExp().
min_stability: Optional float. The minimum stability for the gene you wish to filter for based on the leave-one-out resampling. If NULL, no filtering will be applied.
.verbose: Boolean. Controls verbosity of the function.

Value

The class with updated correlation module names.

References

Srivastava, et al., Nat. Commun., 2018; Francois, Romagnolo, et al., Nat. Commun., 2024.