Calculate Eigengenes for CoReMo modules — cor_module_coremo

This function will calculate the eigengene values for the modules on a per sample basis and add correlations of the gene expression of a given gene within the module to its eigengene.

Usage

cor_module_coremo_eigengene(object, min_stability = NULL, .verbose = TRUE)

Arguments

object: The class, see BulkCoExp().
min_stability: Optional float. The minimum stability for the gene you wish to filter for based on the leave-one-out resampling. If NULL, no filtering will be applied.
.verbose: Boolean. Controls verbosity of the function.

Value

The class with added correlations to the modules and the values for a given eigengene per sample as a data.table.

References

Srivastava, et al., Nat. Commun., 2018; Francois, Romagnolo, et al., Nat. Commun., 2024.