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Transform Seurat raw counts into a List

Usage

get_seurat_counts_to_list(seurat_obj)

Arguments

seurat_obj

Seurat class. The class from which to extract the counts from and transform to a list.

Value

A list with the following elements

  • indptr - Index pointers of the sparse data.

  • indices - Indices of the data.

  • data - The underlying data.

  • format - String that defines if the data is CSR or CSC.

  • nrow - The number of rows.

  • ncol - The number of columns.