Wrapper function to generate CoReMo parameters

Usage

params_coremo(
  epsilon = 2,
  k_min = 2L,
  k_max = 150L,
  min_size = NULL,
  junk_module_threshold = 0.05,
  rbf_func = c("gaussian", "inverse_quadratic", "bump"),
  cor_method = c("spearman", "pearson")
)

Arguments

epsilon: Float. Epsilon parameter for the chosen RBF function, see rbf_func. The higher, the more aggressively low correlations will be shrunk.
k_min, k_max: Integer. Minimum and maximum number of cuts to use for the hierarchical clustering.
min_size: Optional integer. Minimum size of the clusters. Smaller clusters will be combined together.
junk_module_threshold: Float. Threshold for the minimum correlation to be observed in a module. Defaults to 0.05.
rbf_func: String. Type of RBF you wish to apply to down-weigh weak correlations. Defaults to "gaussian".
cor_method: String. The type of correlation to use. Defaults to "spearman".

Value

List with parameters for usage in subsequent function.