Wrapper function for parameters for meta cell generation

Wrapper function for parameters for meta cell generation

Usage

params_sc_metacells(
  max_shared = 15L,
  target_no_metacells = 1000L,
  max_iter = 5000L,
  knn = list()
)

Arguments

max_shared

Integer. Maximum number of allowed shared neighbours for the meta cell to be considered. Defaults to 15L.

target_no_metacells

Integer. Target number of meta-cells to generate. Defaults to 1000L.

max_iter

Integer. Maximum number of iterations for the algorithm. Defaults to 5000L.

knn

List. Optional overrides for kNN parameters. See params_knn_defaults() for available parameters: k, knn_method, ann_dist, search_budget, n_trees, delta, diversify_prob, ef_budget, m, ef_construction, ef_search, n_list and n_probe.

Value

A list with the metacell parameters.