Helper to extract single cell counts as a dense vector for plotting — rs_extract_counts_plots • bixverse

Helper to extract single cell counts as a dense vector for plotting

Usage

rs_extract_counts_plots(f_path, cell_indices, gene_index, norm, scale, clip)

Arguments

f_path: String. Path to the counts_genes.bin file.
cell_indices: Integer positions (0-indexed!) that defines the cells to keep.
gene_index: Integer. Gene index position to return (0-indexed!).
norm: Boolean. Shall normalised counts be returned.
scale: Boolean. Shall the normalised counts be scaled.
clip: Optional float. Clipping for the Z-scores if scale is set to TRUE

Value

The dense vector of expression values for this gene.