Helper to extract single cell counts for several genes — rs_extract_several_genes_plots • bixverse

Helper to extract single cell counts for several genes

Usage

rs_extract_several_genes_plots(f_path, cell_indices, gene_indices, scale, clip)

Arguments

f_path: String. Path to the counts_genes.bin file.
cell_indices: Integer positions (0-indexed!) that defines the cells to keep.
gene_indices: Integer. Gene index position to return (0-indexed!).
scale: Boolean. Shall the normalised counts be scaled.
clip: Optional float. Clipping for the Z-scores if scale is set to TRUE

Value

A list of dense vectors of the normalised counts.