Calculates pairwise gene correlations in single cell — rs_pairwise_gene_cors • bixverse

Calculates pairwise gene correlations in single cell

Usage

rs_pairwise_gene_cors(
  f_path,
  gene_indices_1,
  gene_indices_2,
  cells_to_keep,
  spearman
)

Arguments

f_path: Path to the counts_genes.bin file.
gene_indices_1: Integer vector. The first set of gene indices to correlate against gene_indices_2 (0-indexed!)
gene_indices_2: Integer vector. The second set of gene indices. Needs to be of same length as gene_indices_1. (0-indexed!)
cells_to_keep: Integer. The indices of the cells to include in this analysis. (0-indexed!)
spearman: Boolean. Shall spearman correlation be used.

Value

The vector of correlations between the pairs of gene_indices_1 and gene_indices_2