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Detect Doublets via BoostClassifier (in Rust)

rs_sc_doublet_detection.Rd

Detect Doublets via BoostClassifier (in Rust)

Usage

rs_sc_doublet_detection(
  f_path_gene,
  f_path_cell,
  cells_to_keep,
  boost_params,
  seed,
  streaming,
  verbose
)

Arguments

f_path_gene

String. Path to the counts_genes.bin file.

f_path_cell

String. Path to the counts_cells.bin file.

cells_to_keep

Integer vector. The indices (0-indexed!) of the cells to include in this analysis.

boost_params

List. Parameter list, see params_boost().

seed

Integer. Seed for reproducibility purposes.

streaming

Boolean. Shall the data be streamed for the HVG calculations.

verbose

Boolean. Controls verbosity

Value

A list with

  • predicted_doublets - Boolean vector indicating which observed cells predicted as doublets (TRUE = doublet, FALSE = singlet).

  • doublet_scores_obs - Numerical vector with the likelihood of being a doublet for the observed cells.

  • voting_avg - Voting average across the different iterations.