Calculates the cumulative proportion of the top X genes

This calculates the cumulative proportion of the top X genes, for example Top10, 50, 100. High values here indicate low complexity samples, i.e., bad quality.

Usage

rs_sc_get_top_genes_perc(
  f_path_cell,
  top_n_vals,
  cell_indices,
  streaming,
  verbose
)

Arguments

f_path_cell

String. Path to the counts_cells.bin file.

top_n_vals

Integer. The different Top X to look for.

cell_indices

Integer. The indices of the cells for which to calculate the proportions. (0-indexed!)

streaming

Boolean. Shall the data be worked on in chunks.

verbose

Boolean. Controls verbosity of the function.

Value

A list with the cumulative percentages of the Top X genes defined as in top_n_vals.