Generate TF to gene correlations — tf_to_genes

This function will calculate the correlations between the identified TF to gene pairs. You need to have run identify_tf_to_genes()!

Usage

tf_to_genes_correlations(
  x,
  object,
  cor_filter = NULL,
  remove_self = TRUE,
  spearman = TRUE,
  .verbose = TRUE
)

# S3 method for class 'ScenicGrn'
tf_to_genes_correlations(
  x,
  object,
  cor_filter = NULL,
  remove_self = TRUE,
  spearman = TRUE,
  .verbose = TRUE
)

Arguments

x: ScenicGrn object for which to generate the TF to gene associations.
object: SingleCells object that was used to generate the original GRNs.
cor_filter: Optional float. If you wish to filter out TF genes below a certain correlation. If NULL all genes will be kept.
remove_self: Boolean. Shall self loops (where TF controls its own expression) be removed. Defaults to TRUE.
spearman: Boolean. Shall Spearman correlation be used. Defaults to TRUE.
.verbose: Boolean. Controls verbosity of the function.

Value

Adds the correlations coefficients between to the TF to gene.