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Parameters for trajectory data generation

params_trajectory.Rd

Parameters for trajectory data generation

Usage

params_trajectory(
  topology = c("bifurcation", "linear", "combination"),
  cell_trajectories = NULL,
  noise = 0.1
)

Arguments

topology

Character. One of c("bifurcation", "linear", "combination"). Ignored if cell_trajectories is not NULL. Defaults to "bifurcation".

cell_trajectories

Optional list. Named list with three equal-length vectors: parent (integer, NA for root, zero-indexed), split_at (numeric, fraction along parent where branch starts), and length (numeric, length of the branch). If NULL, topology is used instead. Defaults to NULL.

noise

Numeric. Amount of noise to add. Must be a positive non-zero value. Defaults to 0.1.

Value

A list of parameters for use with manifold_synthetic_data().