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Get the ready obs data from various sub method

get_obs_data.Rd

Helper method that creates data.tables with cell indices which were used in the given analysis + the values that are to be added to the obs table in the DuckDB.

Usage

get_obs_data(x, ...)

# S3 method for class 'ScListRes'
get_obs_data(x, ...)

# S3 method for class 'ScMatrixRes'
get_obs_data(x, columns = NULL, ...)

# S3 method for class 'ScrubletRes'
get_obs_data(x, ...)

# S3 method for class 'BoostRes'
get_obs_data(x, ...)

# S3 method for class 'ScDblFinderRes'
get_obs_data(x, ...)

# S3 method for class 'SingleCellFastClusters'
get_obs_data(x, ...)

Arguments

x

An object to set gene mapping for

...

Other parameters

Value

Returns a data.table with a cell_idx column for the cells included in the analysis and additional columns to be added to the obs table.