Update the correlation matrix to a TOM — cor_module

This function will update the correlation matrix to a topological overlap matrix. It defaults to "v2" and the signed version, please see calculate_tom() for details.

Usage

cor_module_tom(object, signed = TRUE, version = c("v2", "v1"), .verbose = TRUE)

Arguments

object: The class, see BulkCoExp(). You need to have applied cor_module_processing() before applying this function.
signed: Boolean. Do you want to use the signed or unsigned version. Defaults to TRUE.
version: String. One of c("v2", "v1"). Defaults to "v2".
.verbose: Boolean. Controls verbosity of the function.

Value

The class with added data to the properties for subsequent usage.