Generate an RBH graph. — generate_rbh

This function will generate an RBH graph based on set similarity between gene modules. You have the option to use an overlap coefficient instead of Jaccard similarity and to specify a minimum similarity.

Usage

generate_rbh_graph(
  object,
  minimum_similarity,
  overlap_coefficient = FALSE,
  spearman = FALSE
)

Arguments

object: The underlying class, see RbhGraph().
minimum_similarity: The minimum similarity to create an edge.
overlap_coefficient: Boolean. Shall the overlap coefficient be used instead of Jaccard similarity. Only relevant if the underlying class is set to set similarity.
spearman: Boolean. Shall Spearman correlation be used. Only relevant if the underlying class is set to correlation-based similarity.

Value

The class with added properties.