Get the cell names

Returns the cell names (usually barcodes).

Usage

get_cell_names(x, filtered = FALSE)

# S3 method for class 'ScMap'
get_cell_names(x, filtered = FALSE)

## S7 method for class <bixverse::SingleCells>
get_cell_names(x, filtered = FALSE)

## S7 method for class <bixverse::SingleCellsSubset>
get_cell_names(x, filtered = FALSE)

Arguments

x

An object to get the cell names from.

filtered

Boolean. Shall, if found only the cell names of the cells_to_keep be returned (see set_cells_to_keep(). Defaults to FALSE

Value

The cell names (barcodes)

Examples

# barcodes of the cells that passed quality control
sc <- demo_single_cells(prepped = FALSE)
head(get_cell_names(sc, filtered = TRUE), 3)
#> [1] "cell_001" "cell_002" "cell_003"

unlink(sc@dir_data, recursive = TRUE, force = TRUE)