Get correlation-based graph — get_cor_graph • bixverse

Helper function to get a correlation-based igraph from the class

Usage

get_cor_graph(object, epsilon, .verbose)

Arguments

object: The class, see BulkCoExp().
epsilon: Float. The epsilon parameter for the RBF function, in this case the bump function.
.verbose: Boolean. Controls verbosity of the function.

Value

A list with the following elements:

graph - The igraph
params - A list that contains the parameters of the graph generation and general graph information (node, edge numbers).