Get the gene lengths — get_gene_lengths • bixverse

Get the gene lengths

Usage

get_gene_lengths(x, species = c("human", "mouse", "rat"), ...)

## S7 method for class <bixverse::BulkCoExp>
get_gene_lengths(x, species = c("human", "mouse", "rat"), ...)

Arguments

x: Object to extract gene lengths from. Can be a matrix or BulkCoExp object.
species: String. One of c("human", "mouse", "rat").
...: Additional parameters passed to methods.

Examples

if (FALSE) { # \dontrun{
# median transcript length per Ensembl gene, queried from Ensembl
counts <- matrix(
  1:4,
  nrow = 2,
  dimnames = list(c("ENSG00000141510", "ENSG00000012048"), c("s1", "s2"))
)
get_gene_lengths(counts, species = "human")
} # }