Get the MAGIC imputed layer

Returns the ScMagic layer written by run_magic_sc(). This function is used for the single cell-related classes and methods.

Usage

get_magic(x, ...)

# S3 method for class 'ScCache'
get_magic(x, ...)

## S7 method for class <bixverse::SingleCells>
get_magic(x, ...)

## S7 method for class <bixverse::SingleCellsSubset>
get_magic(x, ...)

Arguments

x

An object to get the imputed layer from.

...

Other parameters.

Value

The ScMagic object, or NULL when nothing was imputed.

Examples

# the imputed layer, only the genes MAGIC was asked for
sc <- demo_single_cells()
sc <- run_magic_sc(sc, features = get_gene_names(sc)[1:5], .verbose = FALSE)
dim(get_magic(sc)$data)
#> [1] 500   5

unlink(sc@dir_data, recursive = TRUE, force = TRUE)