Returns the available features for single cell applications — get_sc_available_features • bixverse

Returns a data.table with available features in the obs table and in the count matrices.

Usage

get_sc_available_features(object)

Arguments

object: SingleCells, MetaCells (or potentially other) class.

Value

A data.table with available features.

Examples

# what can be queried from the obs table and the counts
sc <- demo_single_cells(prepped = FALSE)
head(get_sc_available_features(sc), 3)
#>    feature_name origin
#>          <char> <char>
#> 1:     cell_idx    obs
#> 2:      cell_id    obs
#> 3:     cell_grp    obs

unlink(sc@dir_data, recursive = TRUE, force = TRUE)