Getter the var table

Getter the var table

Usage

get_sc_var(object, indices = NULL, cols = NULL, modality = c("rna", "adt"))

Arguments

object

SingleCells, MetaCells, SingleCellsMultiModal class.

indices

Optional integer vector. The integer positions of the genes to return.

cols

Optional string vector. The columns from the var table to return.

modality

String. The modality to return. One of c("rna", "adt").

Value

The vars table

Examples

# the per gene statistics the HVG step wrote
sc <- demo_single_cells()
head(get_sc_var(sc, cols = c("gene_id", "mean", "var_std")), 3)
#>    gene_id   mean   var_std
#>     <char>  <num>     <num>
#> 1: gene_01 11.922 0.9063808
#> 2: gene_02 10.294 0.8359538
#> 3: gene_03 12.002 0.7752684

unlink(sc@dir_data, recursive = TRUE, force = TRUE)