Wrapper function to generate community detection parameters

Usage

params_community_detection(
  max_nodes = 300L,
  min_nodes = 10L,
  min_seed_nodes = 2L,
  initial_res = 0.5,
  threshold_type = c("prop_based", "pval_based"),
  network_threshold = 0.5,
  pval_threshold = 0.1
)

Arguments

max_nodes: Integer. Maximum number of nodes in a given community.
min_nodes: Integer. Minimum number of nodes in a given community.
min_seed_nodes: Integer. Minimum number of seed nodes within a community.
initial_res: Float. Initial resolution parameter to start with.
threshold_type: String. One of c("prop_based", "pval_based"). You can chose to include a certain proportion of the network with the highest diffusion scores, or use p-values based on permutations.
network_threshold: Float. The proportion of the network to include. Used if threshold_type = "prop_based".
pval_threshold: Float. The maximum p-value for nodes to be included. Used if threshold_type = "pval_based".

Value

List with parameters for usage in subsequent function.