Wrapper function for graph generation

Wrapper function for graph generation

Usage

params_cor_graph(
  epsilon = 2,
  min_cor = 0.2,
  fdr_threshold = 0.05,
  verbose = TRUE
)

Arguments

epsilon

Numeric. Defines the epsilon parameter for the radial basis function. Defaults to 2.0.

min_cor

Numeric. Minimum absolute correlation that needs to be observed in either data set. Only relevant for differential correlation-based graphs. Defaults to 0.2.

fdr_threshold

Numeric. Maximum FDR for the differential correlation p-value. Defaults to 0.05.

verbose

Boolean. Controls verbosity of the graph generation function. Defaults to TRUE.

Value

A named list with the following elements:

• epsilon - Numeric. Defines the epsilon parameter for the radial basis function. Defaults to 2.0.

• min_cor - Numeric. Minimum absolute correlation that needs to be observed in either data set. Only relevant for differential correlation-based graphs. Defaults to 0.2.

• fdr_threshold - Numeric. Maximum FDR for the differential correlation p-value. Defaults to 0.05.

• verbose - Boolean. Controls verbosity of the graph generation function. Defaults to TRUE.