Wrapper function for graph generation — params_cor_graph • bixverse

Wrapper function for graph generation

Usage

params_cor_graph(
  epsilon = 2,
  min_cor = 0.2,
  fdr_threshold = 0.05,
  verbose = TRUE
)

Arguments

epsilon: Float. Defines the epsilon parameter for the radial basis function. Defaults to 2, but should be ideally optimised.
min_cor: Float. Minimum absolute correlation that needs to be observed in either data set. Only relevant for differential correlation-based graphs.
fdr_threshold: Float. Maximum FDR for the differential correlation p-value.
verbose: Boolean. Controls verbosity of the graph generation function.

Value

List with parameters for usage in subsequent function.