Wrapper function to generate GSEA parameters

Wrapper function to generate GSEA parameters

Usage

params_gsea(
  min_size = 5L,
  max_size = 500L,
  gsea_param = 1,
  sample_size = 101L,
  eps = 1e-50
)

Arguments

min_size

Integer. Minimum number of genes per gene set. Defaults to 5L.

max_size

Integer. Maximum number of genes per gene set. Defaults to 500L.

gsea_param

Numeric. GSEA parameter. Defaults to 1.0.

sample_size

Integer. Number of samples to iterate through for the multi-level implementation of fgsea. Defaults to 101L.

eps

Numeric. Boundary for calculating the p-value. Used for the multi- level implementation of fgsea. Defaults to 1e-50.

Value

A named list with the following elements:

• min_size - Integer. Minimum number of genes per gene set. Defaults to 5L.

• max_size - Integer. Maximum number of genes per gene set. Defaults to 500L.

• gsea_param - Numeric. GSEA parameter. Defaults to 1.0.

• sample_size - Integer. Number of samples to iterate through for the multi-level implementation of fgsea. Defaults to 101L.

• eps - Numeric. Boundary for calculating the p-value. Used for the multi- level implementation of fgsea. Defaults to 1e-50.