Wrapper function to generate GSVA parameters

Wrapper function to generate GSVA parameters

Usage

params_gsva(
  tau = 1,
  min_size = 5L,
  max_size = 500L,
  max_diff = TRUE,
  abs_rank = FALSE
)

Arguments

tau

Float. Tau parameter, usual recommendation is to use 1.0 here. Larger values emphasise the tails more.

min_size

Integer. Minimum number of genes per gene set.

max_size

Integer. Maximum number of genes per gene set.

max_diff

Boolean. Scoring mode for GSVA, if TRUE = difference; if FALSE = larger absolute value.

abs_rank

Boolean. If TRUE = pos - neg, FALSE = pos + neg.

Value

List with parameters for usage in subsequent function.