Wrapper function for the fastMNN parameters

Wrapper function for the fastMNN parameters

Usage

params_sc_fastmnn(
  ndist = 3,
  cos_norm = TRUE,
  no_pcs = 30L,
  random_svd = TRUE,
  knn = list(k = 20L)
)

Arguments

ndist

Numeric. Number of median distances for the tricube kernel bandwidth. Defaults to 3.0.

cos_norm

Logical. Apply cosine normalisation before computing distances. Defaults to TRUE.

no_pcs

Integer. Number of PCs to use for MNN calculations. Defaults to 30L.

random_svd

Logical. Use randomised SVD. Defaults to TRUE.

knn

List. Optional overrides for kNN parameters. See params_knn_defaults() for available parameters: k, knn_method, ann_dist, search_budget, n_trees, delta, diversify_prob, ef_budget, m, ef_construction, ef_search, n_list and n_probe.

Value

A list with the fastMNN parameters.