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Wrapper function for parameters for HotSpot

Usage

params_sc_hotspot(
  model = c("danb", "normal", "bernoulli"),
  normalise = TRUE,
  knn = list(ann_dist = "cosine")
)

Arguments

model

String. Model to use for modelling the GEX. One of c("danb", "bernoulli", "normal"). Defaults to "danb".

normalise

Boolean. Shall the data be normalised. Defaults to TRUE.

knn

List. Optional overrides for kNN parameters. See params_knn_defaults() for available parameters: k, knn_method, ann_dist, search_budget, n_trees, delta, diversify_prob, ef_budget, m, ef_construction, ef_search, n_list and n_probe.

Value

A list with the HotSpot parameters.