Skip to contents

Wrapper function to generate QC metric params for single cell

params_sc_min_quality.Rd

Wrapper function to generate QC metric params for single cell

Usage

params_sc_min_quality(
  min_unique_genes = 100L,
  min_lib_size = 250L,
  min_cells = 10L,
  target_size = 10000
)

Arguments

min_unique_genes

Integer. Minimum number of unique genes per cell/spot to be included. Defaults to 100L.

min_lib_size

Integer. Minimum library size per cell/spot to be included. Defaults to 250L.

min_cells

Integer. Minimum number of cells a gene has to be expressed to be included. Defaults to 10L.

target_size

Numeric. The target size for the normalisation. Defaults to 10000.0.

Value

A named list with the following elements:

  • min_unique_genes - Integer. Minimum number of unique genes per cell/spot to be included. Defaults to 100L.

  • min_lib_size - Integer. Minimum library size per cell/spot to be included. Defaults to 250L.

  • min_cells - Integer. Minimum number of cells a gene has to be expressed to be included. Defaults to 10L.

  • target_size - Numeric. The target size for the normalisation. Defaults to 10000.0.