Wrapper function for parameters for SuperCell generation

Usage

params_sc_supercell(
  walk_length = 3L,
  graining_factor = 20,
  linkage_dist = c("complete", "average"),
  knn = list()
)

walk_length: Integer. Walk length for the Walktrap algorithm. Defaults to 3L.
graining_factor: Numeric. Graining level of data (proportion of number of single cells in the initial dataset to the number of metacells in the final dataset). Defaults to 20.0. (One meta cell per 20 cells.)
linkage_dist: String. Which type of distance metric to use for the linkage. Defaults to "average".
knn: List. Optional overrides for kNN parameters. See params_knn_defaults() for available parameters: k, knn_method, ann_dist, search_budget, n_trees, delta, diversify_prob, ef_budget, m, ef_construction, ef_search, n_list and n_probe.

A list with the SuperCell parameters.