Wrapper function for parameters for VISION with auto-correlation

Wrapper function for parameters for VISION with auto-correlation

Usage

params_sc_vision(n_perm = 500L, n_cluster = 5L, knn = list())

Arguments

n_perm

Integer. Number of random gene sets to generate per cluster.

n_cluster

Integer. Number of clusters for the random gene set clustering generation.

knn

List. Optional overrides for kNN parameters. See params_knn_defaults() for available parameters: k, knn_method, ann_dist, search_budget, n_trees, delta, diversify_prob, ef_budget, m, ef_construction, ef_search, n_list and n_probe.

Value

A list with the VISION parameters when you wish to use the auto-correlation version.