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Wrapper function for parameters for VISION with auto-correlation

params_sc_vision.Rd

Wrapper function for parameters for VISION with auto-correlation

Usage

params_sc_vision(n_perm = 500L, n_cluster = 5L, knn = list())

Arguments

n_perm

Integer. Number of random gene sets to generate per cluster. Defaults to 500L.

n_cluster

Integer. Number of clusters for the random gene set clustering generation. Defaults to 5L.

knn

List. Optional overrides for kNN parameters. See params_knn_defaults() for available parameters: k, knn_method, ann_dist, search_budget, n_trees, delta, diversify_prob, ef_budget, extract_knn, m, ef_construction, ef_search, n_list and n_probe. See params_knn_defaults() for the available elements. Defaults to list().

Value

A named list with the following elements:

  • n_perm - Integer. Number of random gene sets to generate per cluster. Defaults to 500L.

  • n_cluster - Integer. Number of clusters for the random gene set clustering generation. Defaults to 5L.

  • The elements of params_knn_defaults(), overridden by knn, spliced in at this position.