Skip to contents

Wrapper function to generate ssGSEA parameters

params_ssgsea.Rd

Wrapper function to generate ssGSEA parameters

Usage

params_ssgsea(alpha = 0.25, min_size = 5L, max_size = 500L, normalise = TRUE)

Arguments

alpha

Numeric. The exponent defining the weight of the tail in the random walk performed by ssGSEA. Defaults to 0.25.

min_size

Integer. Minimum number of genes per gene set. Defaults to 5L.

max_size

Integer. Maximum number of genes per gene set. Defaults to 500L.

normalise

Boolean. Shall the scores be normalised. Defaults to TRUE.

Value

A named list with the following elements:

  • alpha - Numeric. The exponent defining the weight of the tail in the random walk performed by ssGSEA. Defaults to 0.25.

  • min_size - Integer. Minimum number of genes per gene set. Defaults to 5L.

  • max_size - Integer. Maximum number of genes per gene set. Defaults to 500L.

  • normalise - Boolean. Shall the scores be normalised. Defaults to TRUE.