Pre-process data for subsequent ontology similarity — pre_process_sim

This function calculates needed information for semantic similiary calculations

Usage

pre_process_sim_onto(object, .verbose = TRUE)

Arguments

object: OntologySim class. See OntologySim().
.verbose: Boolean. Controls verbosity of the function.

Value

The class with added pre-processed data for semantic similarities to the properties.

Examples

# ancestors, descendants and information content added to the class
onto <- data.table::data.table(
  parent = c("a", "b", "b", "b", "c"),
  child = c("b", "c", "d", "e", "f"),
  type = c("part_of", "part_of", "part_of", "is_a", "is_a")
)
onto_obj <- OntologySim(onto, .verbose = FALSE)
onto_obj <- pre_process_sim_onto(onto_obj, .verbose = FALSE)
names(S7::prop(onto_obj, "outputs"))
#> [1] "ancestors"           "descendants"         "information_content"