Remove samples from object — remove_samples • bixverse

This function allows to remove certain samples from the object

Usage

remove_samples(object, samples_to_remove, ...)

Arguments

object: The underlying object, either BulkCoExp() or BulkDge().
samples_to_remove: Character vector. The sample identifiers to remove.
...: Additional arguments to parse to the functions.

Value

Returns the object with the samples removed. This will regenerated the object from the start and remove any data in it.

Examples

# drop the first two samples and rebuild the object
syn <- synthetic_bulk_cor_matrix()
meta <- data.table::data.table(sample_id = colnames(syn$counts))
object <- BulkDge(raw_counts = syn$counts, meta_data = meta)
object <- remove_samples(object, c("sample_1", "sample_2"))
dim(S7::prop(object, "raw_counts"))
#> [1] 1000   98