BBKNN implementation in Rust

This function implements the BBKNN algorithm from Polański, et al.

Usage

rs_bbknn(embd, batch_labels, bbknn_params, seed, verbose)

Arguments

embd

Numerical matrix. The embedding matrix to use to generate the BBKNN parameters. Usually PCA. Rows represent cells.

batch_labels

Integer vector. These represent to which batch a given cell belongs.

bbknn_params

List. Contains all of the BBKNN parameters.

seed

Integer. Seed for reproducibility purposes.

verbose

Boolean. Controls verbosity of the function.

Value

A list of two lists representing the sparse matrix representation of the distances and the connectivities.

References

Polański, et al., Bioinformatics, 2020