Rust implementation of the fgsea::calcGseaStat() function — rs_calc_gsea_stats • bixverse

Rust implementation of the fgsea::calcGseaStat() function

Usage

rs_calc_gsea_stats(
  stats,
  gs_idx,
  gsea_param,
  return_leading_edge,
  return_all_extremes
)

Arguments

stats: Numeric vector. The gene level statistic. Needs to sorted in descending nature.
gs_idx: Integer vector. The indices of the gene set genes.
gsea_param: Float. The GSEA parameter. Usually defaults to 1.0.
return_leading_edge: Boolean. Return the leading edge indices.
return_all_extremes: Boolean. Shall the extreme values be returned for plotting.

Value

List with the following elements

gene_stat Enrichment score for that gene set
leading_edge Indicies of the leading edge genes.
top Top values of the curve.
bottom Bottom values of the curve.