Calculates p-values for pre-processed data

Usage

rs_calc_multi_level(stats, es, pathway_size, sample_size, seed, eps, sign)

stats: Named numerical vector. Needs to be sorted. The gene level statistics.
es: Numerical vector. The enrichment scores of the pathways of that specific size
pathway_size: Integer. The size of the pathways to test.
sample_size: Integer. The size of the random gene sets to test against.
seed: Integer. Random seed.
eps: Float. Boundary for calculating the p-value.
sign: Boolean. Used for the only positive or only negative score version.

List with the following elements:

pvals The pvalues.
is_cp_ge_half Flag indicating if conditional probability is ≥ 0.5. Indicates overesimation of the p-values.