Harmony batch correction in Rust — rs_harmony • bixverse

This function implements the Harmony algorithm from

Usage

rs_harmony(pca, harmony_params, batch_labels, seed, verbose)

Arguments

pca: Numerical matrix, i.e., the PCA matrix you want to correct.
harmony_params: List. The parameters for the Harmony algorithm.
batch_labels: List. Each element in the list needs to be a 0-indexed integer that represents the batch effects you wish to regress out.
seed: Integer. Seed for reproducibility purposes.
verbose: Boolean. Controls verbosity of the function.

Value

The batch-corrected Harmony embedding space.