Construct an empty single cell pipeline — sc

Linear container of ScSteps. Append steps with %>>% and execute with apply_pipeline(). Pipelines are inert until applied; steps can be inspected via pipeline$steps.

Usage

sc_pipeline()

Value

An empty ScPipeline object.

Examples

# an empty container, filled with `%>>%`
sc_pipeline() %>>%
  step_hvg_sc(hvg_no = 30L) %>>%
  step_pca_sc(no_pcs = 10L)
#> <ScPipeline> 2 steps
#>   1. hvg  hvg_no = 30L, hvg_params = <list>, streaming = NULL, .verbose = TRUE
#>   2. pca  no_pcs = 10L, pca_params = <list>, sparse_svd = FALSE, hvg = NULL, seed = 42L, .verbose = TRUE