Return the epsilon data

Getter function to extract the epsilon param ~ power law goodness of fit data from the BulkCoExp() class.

Usage

get_epsilon_res(object)

Arguments

object

BulkCoExp class.

Value

Returns the epsilon data. (If found. Otherwise NULL).

Examples

# scale-free fit of the affinity matrix across epsilons
syn <- synthetic_bulk_cor_matrix()
mat <- log1p(t(syn$counts))
meta <- data.table::data.table(sample_id = rownames(mat))
object <- BulkCoExp(raw_data = mat, meta_data = meta)
object <- preprocess_bulk_coexp(object, hvg = 200L, .verbose = FALSE)
object <- cor_module_processing(
  object,
  cor_method = "pearson",
  .verbose = FALSE
)
object <- cor_module_check_epsilon(
  object,
  rbf_func = "gaussian",
  .verbose = FALSE
)
head(get_epsilon_res(object))
#>    epsilon   r2_vals
#>      <num>     <num>
#> 1:    10.0 0.6472736
#> 2:     9.5 0.5733779
#> 3:     9.0 0.6103945
#> 4:     8.5 0.6367963
#> 5:     8.0 0.6010812
#> 6:     7.5 0.4571262