Plot the resolution results. — plot_resolution

Plots the resolution results (if they can be found in the class). The x-axis reflects the different resolutions and the y axis the modularity observed with that resolution.

Usage

plot_resolution_res(object, print_head = TRUE, ...)

Arguments

object: The class, either RbhGraph or BulkCoExp.
print_head: Boolean. Print the Top5 resolution parameters and their meta data. Only applicable for BulkCoExp objects.
...: Additional arguments to parse to the functions.

Value

Plots the result, if the results were found in the class. Otherwise, throws a warning and returns NULL.

Examples

# modularity across the resolutions tested on an RBH graph
set.seed(123)
modules <- data.table::data.table(
  origin = rep(c("set_a", "set_b"), each = 20),
  module = rep(c("m1", "m2", "m3", "m4"), each = 10),
  gene = unlist(replicate(4, sample(letters, 10), simplify = FALSE))
)
object <- RbhGraph(
  modules,
  rbh_type = "set",
  dataset_col = "origin",
  module_col = "module",
  value_col = "gene"
)
object <- generate_rbh_graph(object, minimum_similarity = 0)
object <- find_rbh_communities(object, parallel = FALSE, .verbose = FALSE)
plot_resolution_res(object)