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Load in h5ad data via Rust

rs_h5ad_data.Rd

Loads in h5ad data within Rust and automatically converts the data into CSR with cells x genes.

Usage

rs_h5ad_data(f_path, cs_type, nrows, ncols, cell_quality, verbose)

Arguments

f_path

File path. The path to the h5ad file.

cs_type

String. Is the data stored in CSC or CSR.

nrows

Integer. Number of rows in the file.

ncols

Integer. Number of columns in the file.

cell_quality

List. Specifiying the cell quality. Please refer to params_sc_min_quality().

verbose

Boolean. Controls verbosity of the function

Value

A list with:

  • data - The data of the sparse matrix stored on the h5ad file.

  • indices - The indices of the sparse matrix stored in the h5ad file.

  • indptr - The indptr of the sparse matrix stored in the h5ad file.

  • no_genes - No of genes in the sparse matrix (i.e., ncol).

  • no_cells - No of cells in the sparse matrix (i.e., nrow).