Load in h5ad data via Rust
rs_h5ad_data.Rd![[Experimental]](figures/lifecycle-experimental.svg)
Loads in h5ad data within Rust and automatically converts the data into
CSR with cells x genes.
Arguments
- f_path
File path. The path to the h5ad file.
- cs_type
String. One of
c("csr", "csc"). How the data is stored in the file. Other values raise an error.- nrows
Integer. Number of rows in the file.
- ncols
Integer. Number of columns in the file.
- cell_quality
List. Specifying the cell quality. Please refer to
params_sc_min_quality().- slot
String. In which slot the raw data can be found. One of
c("X", "raw", "layers.counts"). Unknown strings default to"X".- verbose
Boolean. Controls verbosity of the function
Value
A list with the CSR data (cells x genes) of the cells and genes
passing cell_quality:
data - The counts of the sparse matrix.
indices - The 0-based gene indices of the sparse matrix.
indptr - The index pointers of the sparse matrix.
no_genes - No of genes in the sparse matrix (i.e., ncol).
no_cells - No of cells in the sparse matrix (i.e., nrow).