Set/add the MAGIC imputed layer

Set/add the MAGIC imputed layer

Usage

set_magic(x, magic, ...)

# S3 method for class 'ScCache'
set_magic(x, magic, ...)

## S7 method for class <bixverse::SingleCells>
set_magic(x, magic, ...)

## S7 method for class <bixverse::SingleCellsSubset>
set_magic(x, magic, ...)

Arguments

x

An object to add the imputed layer to.

magic

ScMagic class with the imputed counts.

...

Other parameters.

Value

The object with the imputed layer attached.

Examples

# the imputed layer taken out and put back
sc <- demo_single_cells()
sc <- run_magic_sc(sc, features = get_gene_names(sc)[1:5], .verbose = FALSE)
magic <- get_magic(sc)
sc <- set_magic(remove_magic(sc), magic)
dim(get_magic(sc)$data)
#> [1] 500   5

unlink(sc@dir_data, recursive = TRUE, force = TRUE)